A zero-one matrix is a matrix with entries from $\{0, 1\}$. We study monoids containing only such matrices. A finite set of zero-one matrices generating such a monoid can be seen as the matrix representation of an unambiguous finite automaton, an important generalisation of deterministic finite automata which shares many of their good properties.
Let $\mathcal{A}$ be a finite set of $n \times n$ zero-one matrices generating a monoid of zero-one matrices, and $m$ be the cardinality of $\mathcal{A}$. We study the computational complexity of computing the minimum rank of a matrix in the monoid generated by $\mathcal{A}$. By using linear-algebraic techniques, we show that this problem is in $\textsf{NC}$ and can be solved in $\mathcal{O}(mn^4)$ time and $\mathcal{O}(n^2)$ space. We also provide a combinatorial algorithm finding a matrix of minimum rank in $\mathcal{O}(mn^4)$ time and $\mathcal{O}(n^3)$ space. As a byproduct, we show a very weak version of a generalisation of the Černý conjecture: there always exists a straight line program of size $\mathcal{O}(n^2)$ describing a product resulting in a matrix of minimum rank.
For the special case corresponding to total DFAs (that is, for the case where all matrices have exactly one 1 in each row), the minimum rank is the size of the smallest image of the set of all states under the action of a word. Our combinatorial algorithm finds a matrix of minimum rank in time $\mathcal{O}(n^3 + mn^2)$ in this case.